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  • Visualization of Colocalization Between eQTL and GWAS Data
    Although colocalization of the BBS1 eQTL and LDL GWAS signal spans the entire association peak, most but not all of the GWAS-significant variants are in strong LD with each other
  • eQTpLot: a user-friendly R package for the visualization of . . .
    To address this issue, we developed the intuitive and user-friendly R package eQTpLot eQTpLot takes as input standard GWAS and cis-eQTL summary statistics, and optional pairwise LD information, to generate a series of plots visualizing colocalization, correlation, and enrichment between eQTL and GWAS signals for a given gene-trait pair
  • SNP的区域关联图（regional association plots）+位置连锁信息-locuszoom
    目的：展示单个GWAS QTL数据的lead SNP范围、附近基因及连锁不平衡情况，孟德尔随机化分析中，可用来展示暴露或结局的SNP情况 绘制：在线绘制： http: locuszoom org 点击single plot 上传SNP数据文件，只需SNP及…
  • eQTpLot: a user-friendly R package for the visualization of . . .
    eQTpLot: a user-friendly R package for the visualization of colocalization between eQTL and GWAS signals
  • eQTL colocalization analysis highlights novel susceptibility genes in . . .
    Expression quantitative trait locus (eQTL) colocalization analysis determines whether a specific variant is responsible for both a local eQTL and GWAS association and has helped leverage
  • pylocuszoom · PyPI
    Designed for publication-ready GWAS visualization with regional association plots, gene tracks, eQTL, PheWAS, fine-mapping, and forest plots Inspired by LocusZoom and locuszoomr
  • ezQTL - Cancer
    Simultaneously and interactively visualize association P-values and linkage disequilibrium (LD) patterns for GWAS and QTL datasets using two LocusZoom -style plots for a given trait (e g gene expression) in a locus of interest
  • Colocalization of GWAS and eQTL Signals Detects Target Genes
    We use both simulated and real datasets to demonstrate the utility of our method Using publicly available eQTL data on 45 different tissues, we demonstrate that eCAVIAR can prioritize likely relevant tissues and target genes for a set of glucose- and insulin-related trait loci
  • GWAS and eQTL signals - Life·Intelligence - 博客园
    One approach to understanding the biological basis of these associations has been to explore whether GWAS signals from intermediate cellular phenotypes, in particular gene expression, are located in the same loci (“colocalise”) and are potentially mediating the disease signals





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